PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF009800030CFD_t1
Common NameTRAES_3BF009800030CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 319aa    MW: 34701.2 Da    PI: 10.3505
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF009800030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.12.7e-1418104186
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                              +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++ +       s +
  TRAES3BF009800030CFD_t1  18 CWSEGETAALVDAWGSRYIDLNRGSLRQPQWREVADAVntrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGP------SPW 97 
                              7*******************************************999999*********************999886......46* PP

                 trihelix  80 pyfdqle 86 
                              p+f+ql+
  TRAES3BF009800030CFD_t1  98 PFFRQLD 104
                              *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.1E-2516105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYIDLNR GSLRQPQWRE VADAVNTRPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWPFF RQLDVLVGPT LSAAAAKKPS  120
PPRALPMLRR RMSPSRSPSP PSPAPPMALP LPNYRRGSNL PAADLFHKAA AAAAAADSDS  180
DDGYNNNNNY DDDEGSQQSA SRSVSSHSGG NGPPVLGGGG GGGGGNKRKR GGAGGFGELA  240
MAMETFAEMY ERMEAAKQRH AEEMEKQRIK FLKDLELKRM QAFVDMQLQL SRVKQAKNGT  300
SEMLMSLAAL PFLSNPAYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148795.11e-147trihelix transcription factor ASIL1-like
TrEMBLA0A077RZA10.0A0A077RZA1_WHEAT; Uncharacterized protein
TrEMBLA0A446PXQ00.0A0A446PXQ0_TRITD; Uncharacterized protein
STRINGBRADI2G46320.11e-140(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-30sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]