PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF015800010CFD_t1
Common NameTRAES_3BF015700080CFD_c1, TRAES_3BF015800010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 111aa    MW: 12623.7 Da    PI: 9.7212
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF015800010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26061.72e-1921024100
                   DUF260   4 aCkvlrrkCakdCvlapyfpaeqpkkfan.vhklFGasn..vl.kllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                              aCk+lrr+Ca++Cvl  yfpa+qp+ ++     l++ +   v      +lp +er +a++++v+eA++ ++ PvyG+ g+i++lq+
  TRAES3BF015800010CFD_t1   2 ACKYLRRRCAPNCVLTLYFPASQPSPLRRrPPGLWRHQSrmVArGSRYSLPVDERAQAAETMVMEAQWLVEGPVYGCDGIINQLQE 87 
                              9**********************8666541455665433112203344669999******************************** PP

                   DUF260  86 qleqlkaelallkee 100
                              +++ ++ +l +++++
  TRAES3BF015800010CFD_t1  88 EIQPTQCKLTRTRAQ 102
                              *********999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089113.7731103IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-182100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MACKYLRRRC APNCVLTLYF PASQPSPLRR RPPGLWRHQS RMVARGSRYS LPVDERAQAA  60
ETMVMEAQWL VEGPVYGCDG IINQLQEEIQ PTQCKLTRTR AQLSIVLVHG A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-101HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151477.14e-41LOB domain-containing protein 24-like
TrEMBLA0A077S6L23e-76A0A077S6L2_WHEAT; Uncharacterized protein
STRINGEMT015731e-36(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.14e-21LOB domain-containing protein 23
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]