PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF015800060CFD_t1
Common NameTRAES_3BF015800060CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 302aa    MW: 32450 Da    PI: 9.2852
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF015800060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.94.3e-212393173
                 trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73
                             rWt++e+l+Li+a+r +e+r  +      +W+ vs+++r++g+er+p qC+++w nl+++ kki ++ekk++ 
  TRAES3BF015800060CFD_t1 23 RWTRHETLVLIQAKRVTEQRAAQ--PVRLKWAVVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKKHAT 93
                             8****************998655..5899*****************************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.761678IPR017877Myb-like domain
PfamPF138371.5E-92392No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMSANGDSPA GAAVTTPRSR LPRWTRHETL VLIQAKRVTE QRAAQPVRLK WAVVSAYCRR  60
HGVERGPMQC RKRWGNLSWD LKKIVAWEKK HATAAAAVAG DADSAAPERE SFWDMRGEER  120
RARQLPSSFD REVYDAIVGA GGAANQLKPD SAEEMELADD ADEHPPSPMM VMPIQARMYV  180
PPASSRSQHE CSDPATESAK KPASDKNSTS QQDSEATFGA GVGAEDTDTA TATPTAAAGT  240
TSMGRQMSEA LERATVCWRS SWRRRGRTGT RTGSTGGRSS PPSTSSPTPP PGSPRGSDVS  300
TG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184285.11e-154trihelix transcription factor ASR3-like
TrEMBLA0A077S6K80.0A0A077S6K8_WHEAT; Uncharacterized protein
STRINGMLOC_61814.11e-149(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-34Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]