PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF019300010CFD_t1
Common NameTRAES_3BF019300010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 254aa    MW: 27621.8 Da    PI: 5.6992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF019300010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM136.41.9e-4251361128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgy 82 
                              lppG+rF Pt+eel+++yL++k++g++ ++e+vi+ vd+y+v+P +L +     + +e + w++F+ r++++a+g r++r+t sgy
  TRAES3BF019300010CFD_t1   5 LPPGYRFYPTEEELICFYLRNKLDGSRGDIERVIPVVDVYSVDPLQLSEiherLCGGEGEPWFYFCARQEREARGGRPSRTTPSGY 90 
                              79****************************99***************84344433447789************************* PP

                      NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              Wka g+   v+s++++ +gl+kt+vfy+grap+g+kt+W m+eyr+
  TRAES3BF019300010CFD_t1  91 WKAAGTPGVVYSADRRPIGLRKTMVFYRGRAPSGTKTKWKMNEYRA 136
                              ********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-473181IPR003441NAC domain
PROSITE profilePS5100545.9735181IPR003441NAC domain
PfamPF023652.2E-236135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MADGLPPGYR FYPTEEELIC FYLRNKLDGS RGDIERVIPV VDVYSVDPLQ LSEIHERLCG  60
GEGEPWFYFC ARQEREARGG RPSRTTPSGY WKAAGTPGVV YSADRRPIGL RKTMVFYRGR  120
APSGTKTKWK MNEYRAFQHE HHDDGAGAPT ATGGPHAAAP PVPNLPPQLR SEFSLCRLYT  180
KSGTLRQFDR RPVAAAARGD IPGPSTAATA SPGDGDGSGG SMQPLEEELM EGADGDPYGD  240
DIATLAALLY SPTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-29513817144NO APICAL MERISTEM PROTEIN
1ut4_B7e-29513817144NO APICAL MERISTEM PROTEIN
1ut7_A7e-29513817144NO APICAL MERISTEM PROTEIN
1ut7_B7e-29513817144NO APICAL MERISTEM PROTEIN
4dul_A7e-29513817144NAC domain-containing protein 19
4dul_B7e-29513817144NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158560.11e-161NAC domain-containing protein 90-like
SwissprotQ9FMR38e-67NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A077RWI00.0A0A077RWI0_WHEAT; Uncharacterized protein
TrEMBLA0A446Q6550.0A0A446Q655_TRITD; Uncharacterized protein
STRINGEMT139751e-161(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-67NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]