PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF020100160CFD_t1
Common NameTRAES_3BF020100160CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 353aa    MW: 38751.2 Da    PI: 7.7902
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF020100160CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.21.2e-51251561128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                              lppGfrF Ptdeel+v+yL++++++ ++++  vi+evdiyk++Pw+Lp +  ++++++ewyfFs+rd+ky++g r+nra+ sgyWk
  TRAES3BF020100160CFD_t1  25 LPPGFRFYPTDEELIVHYLRRRAAAAPCPA-AVIAEVDIYKLDPWELPsRaVFEGDNDEWYFFSPRDRKYPNGVRPNRAAGSGYWK 109
                              79****************************.89***************6335556667**************************** PP

                      NAM  85 atgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              atg+dk++++    +ge+vg+kk Lvfy+gr pkg kt+W+mheyrl
  TRAES3BF020100160CFD_t1 110 ATGTDKPITAGgvpGGEVVGVKKALVFYQGRPPKGLKTNWIMHEYRL 156
                              *********988889999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-6321193IPR003441NAC domain
PROSITE profilePS5100561.72725193IPR003441NAC domain
PfamPF023658.0E-2726156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MTIELQSRPS LPAPAGAPPR AGTGLPPGFR FYPTDEELIV HYLRRRAAAA PCPAAVIAEV  60
DIYKLDPWEL PSRAVFEGDN DEWYFFSPRD RKYPNGVRPN RAAGSGYWKA TGTDKPITAG  120
GVPGGEVVGV KKALVFYQGR PPKGLKTNWI MHEYRLADAH AAAVAHTYRP PTRFKASSSM  180
RLDDWVLCRI YKKPNPQQLS PFYEPSPSPS SMDASLGLGH HHHHQYQQQR QQQQEDTSSS  240
SRMLPRNPSI SDYLVDYSAV SELFDSMPPP PQPETTASSA GQFFLGTTTT GAGDGEASTA  300
HKRQATADSN NDGEMSSLHA SKRWLGSDGS MTTMMNGGFS IFGPDQPSQQ DRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-681919811170NO APICAL MERISTEM PROTEIN
1ut4_B4e-681919811170NO APICAL MERISTEM PROTEIN
1ut7_A4e-681919811170NO APICAL MERISTEM PROTEIN
1ut7_B4e-681919811170NO APICAL MERISTEM PROTEIN
3swm_A4e-681919814173NAC domain-containing protein 19
3swm_B4e-681919814173NAC domain-containing protein 19
3swm_C4e-681919814173NAC domain-containing protein 19
3swm_D4e-681919814173NAC domain-containing protein 19
3swp_A4e-681919814173NAC domain-containing protein 19
3swp_B4e-681919814173NAC domain-containing protein 19
3swp_C4e-681919814173NAC domain-containing protein 19
3swp_D4e-681919814173NAC domain-containing protein 19
4dul_A4e-681919811170NAC domain-containing protein 19
4dul_B4e-681919811170NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0371820.0HM037182.1 Triticum aestivum NAC transcription factor (NAC025) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183872.10.0NAC domain-containing protein 18-like
TrEMBLA0A077RVW60.0A0A077RVW6_WHEAT; Uncharacterized protein
STRINGTRIUR3_16902-P11e-169(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-63NAC domain containing protein 25
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]