PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF021600020CFD_t1
Common NameTRAES_3BF021600020CFD_c1, WPI2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24038.5 Da    PI: 7.7611
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF021600020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.35.6e-30959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krien+snrqvtfskR+ngilKKA+E+SvLCdaev v++fss gkly+++s
  TRAES3BF021600020CFD_t1  9 KRIENQSNRQVTFSKRKNGILKKAKEISVLCDAEVGVVVFSSAGKLYDFCS 59
                             79***********************************************96 PP
2K-box73.55.9e-2571165195
                    K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 
                              yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l++  +k++e++ + +++ ++ e+e
  TRAES3BF021600020CFD_t1  71 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTSLHEKQMEHYDRLVKHGKMLEDE 156
                              89999999*************************************************************************99999 PP

                    K-box  87 lqeenkaLr 95 
                              ++    + +
  TRAES3BF021600020CFD_t1 157 NKLLAFKVH 165
                              987766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.828161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-34296IPR002100Transcription factor, MADS-box
CDDcd002651.62E-42280No hitNo description
PRINTSPR004047.1E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.0E-1682164IPR002487Transcription factor, K-box
PROSITE profilePS5129712.55284170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKIEIKR IENQSNRQVT FSKRKNGILK KAKEISVLCD AEVGVVVFSS AGKLYDFCSP  60
KTSLSRILEK YQTNSGKILW DEKHKSLSAE IDRIKKENDN MQIELRHLKG EDLNSLQPKE  120
LIMIEEALDN GLTSLHEKQM EHYDRLVKHG KMLEDENKLL AFKVHQHDIA LSGSMRDLEL  180
GYHPDRDFAA QMPITFRVQP SHPNLQEDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-21171169Myocyte-specific enhancer factor 2B
1tqe_Q7e-21171169Myocyte-specific enhancer factor 2B
1tqe_R7e-21171169Myocyte-specific enhancer factor 2B
1tqe_S7e-21171169Myocyte-specific enhancer factor 2B
6c9l_A7e-21171169Myocyte-specific enhancer factor 2B
6c9l_B7e-21171169Myocyte-specific enhancer factor 2B
6c9l_C7e-21171169Myocyte-specific enhancer factor 2B
6c9l_D7e-21171169Myocyte-specific enhancer factor 2B
6c9l_E7e-21171169Myocyte-specific enhancer factor 2B
6c9l_F7e-21171169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1079920.0AB107992.1 Triticum aestivum WPI2 mRNA for PISTILLATA-like MADS box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172714.11e-153MADS-box transcription factor 2
SwissprotQ407021e-138MADS2_ORYSJ; MADS-box transcription factor 2
TrEMBLQ76DP81e-153Q76DP8_WHEAT; PISTILLATA-like MADS box protein
STRINGMLOC_59262.21e-153(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34343877
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.11e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Hama E,Takumi S,Ogihara Y,Murai K
    Pistillody is caused by alterations to the class-B MADS-box gene expression pattern in alloplasmic wheats.
    Planta, 2004. 218(5): p. 712-20
    [PMID:14652757]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]