PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF025700020CFD_t1
Common NameTRAES_3BF025700020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 237aa    MW: 26122.3 Da    PI: 4.905
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF025700020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind31.64.2e-101749100
                              HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
             HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                              +++d++++ ++     +nsfvv+d+  +++ +Lp +Fkhsnf+SF         +kv+ +          we +h sF +g+++ll
  TRAES3BF025700020CFD_t1   1 MVDDPATDAVVAQGPASNSFVVTDPFALSEMLLPAHFKHSNFSSF---------RKVDPDP---------WELAHASFLRGQTHLL 68 
                              899***********999***************************7.........5565555.........7777777777777777 PP

                              XXXXXX CS
             HSF_DNA-bind  95 ekikrk 100
                               +i r+
  TRAES3BF025700020CFD_t1  69 PRIVRR 74 
                              777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.8E-13174IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-7174IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-12174IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-12174IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVDDPATDAV VAQGPASNSF VVTDPFALSE MLLPAHFKHS NFSSFRKVDP DPWELAHASF  60
LRGQTHLLPR IVRRSGGGSR RAKEDGDEEE GISSTALAME VVRLRNEQRA TEERVAAMWR  120
RVQDAERRPK LMLAFLLKVV GDPDALHRLV GNLSSDDGLI PAEGAEAKRP RLLLNREVQV  180
GEQMHVDGEG QLYGISLQKA FIRESPVDFT GFYTGGDGFS DVPTDDPPYA FTVDGSY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196612.11e-117heat stress transcription factor C-2a-like
SwissprotQ6EUG41e-70HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A080YTS31e-172A0A080YTS3_WHEAT; Uncharacterized protein
STRINGTraes_3B_C25DF6B46.11e-111(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-40heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]