PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF025700040CFD_t1
Common NameTRAES_3BF025700040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 229aa    MW: 25563 Da    PI: 4.852
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF025700040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind76.25.6e-241839100
                              HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
             HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                              +++d++++ ++ w + +nsf+v+d+  f++ +Lp++Fkhsnf+SFv Q n+YgF+kv+ ++         weF++  F +g+ +ll
  TRAES3BF025700040CFD_t1   1 MVDDPAMDAMVAWGSASNSFAVTDPFAFSEMLLPTHFKHSNFSSFVPQVNTYGFRKVNPDR---------WEFADAFFLRGQMHLL 77 
                              899*******************************************************999.........**************** PP

                              XXXXXX CS
             HSF_DNA-bind  95 ekikrk 100
                               +i r+
  TRAES3BF025700040CFD_t1  78 PRIVRR 83 
                              ***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.1E-27183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-26183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.7E-21183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.71E-24183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-73244IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-74557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVDDPAMDAM VAWGSASNSF AVTDPFAFSE MLLPTHFKHS NFSSFVPQVN TYGFRKVNPD  60
RWEFADAFFL RGQMHLLPRI VRRWNGGKRG KEDAGEGDED ISSKMLAMEV VRLKEEQRAT  120
KDRLAAMWRP VQDAECRPKL MLAFLLKVVG DPDVLRRLVG NLSSNDGLFP GEGAETKRPR  180
LLLNGEAQMQ DAFVGEPGVD FTGFYTGGDG FSEVPVDNPP YAFPMDTGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-1718336129Heat shock factor protein 1
5d5v_B3e-1718336129Heat shock factor protein 1
5d5v_D3e-1718336129Heat shock factor protein 1
5hdg_A2e-1718317110Heat shock factor protein 1
5hdn_A2e-1718317110Heat shock factor protein 1
5hdn_B2e-1718317110Heat shock factor protein 1
5hdn_C2e-1718317110Heat shock factor protein 1
5hdn_D2e-1718317110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196612.11e-119heat stress transcription factor C-2a-like
SwissprotQ6EUG41e-77HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBLA0A080YTS51e-167A0A080YTS5_WHEAT; Uncharacterized protein
STRINGTraes_3B_754688BC3.21e-145(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-51heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]