PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF035300010CFD_t1
Common NameTRAES_3BF035300010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 203aa    MW: 22141.6 Da    PI: 10.4369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF035300010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.6e-062664532
                             HHHHHHHHHHHHHHHHHHHHCTSCC.C............ CS
                      HLH  5 hnerErrRRdriNsafeeLrellPk.as..........k 32
                             ++  Er+RR+r++   ++L +l+Pk  +          +
  TRAES3BF035300010CFD_t1 26 KKRSERQRRQRMKALCDKLASLIPKqHFphalgsldvaA 64
                             5678*********************44454444444441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.9662170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-92684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-92781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00212776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-42974No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEMKAKPVSG GKRTRATGDT AAPMEKKRSE RQRRQRMKAL CDKLASLIPK QHFPHALGSL  60
DVAASYIKKL KERVDDLQHK KVSAQAIATL LGVSGISTPT ITATTSSGAG SPEGGKKLEV  120
SPRVVDVRQY DDESMEVRLI CSTERPIKIH EVITILEEEG AVIINANHSV AADRIFYTIH  180
SRAFSTRIGI GVSRISERLG ALV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183664.11e-116uncharacterized protein LOC109769323
TrEMBLA0A3B6FDM91e-145A0A3B6FDM9_WHEAT; Uncharacterized protein
STRINGEMT050691e-108(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-11bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]