PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF035300020CFD_t1
Common NameTRAES_3BF035300020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 143aa    MW: 15552 Da    PI: 9.6319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF035300020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-08756554
                             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             ++  Er RR+r++   e+L +l+Pk  + +++  ++    L  A  YIk+L
  TRAES3BF035300020CFD_t1  7 KKVLERERRQRMKALCEKLGSLIPKeHF-PHADTMTQLGSLDVAASYIKKL 56
                             6789*********************665.56666***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.972256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-5756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.45E-5758No hitNo description
Gene3DG3DSA:4.10.280.103.0E-12772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-10772IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0013862IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAVPVEKKVL ERERRQRMKA LCEKLGSLIP KEHFPHADTM TQLGSLDVAA SYIKKLTEWV  60
DELQHKKTSI QAMATLLGVN GISTPIITAT RSSGAGSPEG GNKMEASPLV VEVRQPGYAS  120
MEAFSTRIGI DASRISERLG AFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-141HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183664.11e-66uncharacterized protein LOC109769323
TrEMBLA0A077RSZ11e-101A0A077RSZ1_WHEAT; Uncharacterized protein
TrEMBLA0A3B6FE631e-100A0A3B6FE63_WHEAT; Uncharacterized protein
STRINGEMT050692e-66(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-09bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]