PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF035300040CFD_t1
Common NameTRAES_3BF035300040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 210aa    MW: 22914.9 Da    PI: 8.7497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF035300040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.8e-082877554
                             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
                      HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54
                              +e+Er RR++++   ++L +l+Pk  +  +++  ++    L +A  YIk+L
  TRAES3BF035300040CFD_t1 28 RKEAERERRQHMKALCAKLTSLIPKeHF--SNPDtMTQLGSLDEAASYIKKL 77
                             579**********************876..5555699*************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-101790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.552377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-132892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-62983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-52977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEMQAKAARG GKRSRTSGGT TTTRVVERKE AERERRQHMK ALCAKLTSLI PKEHFSNPDT  60
MTQLGSLDEA ASYIKKLKER VDELQHRRNS AQAMAAARGA SGASTPTTTP TTSGGAGSPE  120
GEKHWEALAP VVEVQQHDDT SMDVVLVCST ERPIMLHQVI TILEEEGAEV VNANHSVVGH  180
KIFYTIHSRA FSSRIGIDVS SVSERLRALV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3538220.0AK353822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003A14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190834.11e-114uncharacterized protein LOC109776583
TrEMBLA0A077RR471e-153A0A077RR47_WHEAT; Uncharacterized protein
STRINGTRIUR3_27194-P11e-115(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-14bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]