PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF035300090CFD_t1
Common NameTRAES_3BF035300090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 211aa    MW: 22548.6 Da    PI: 9.7767
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF035300090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-081883455
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC.................TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  4 ahnerErrRRdriNsafeeLrellPkas..............kapskKlsKaeiLekAveYIksLq 55
                               +e+E++RR +++    +L +l+P++s              + ++   +  + L  A  YIk+L+
  TRAES3BF035300090CFD_t1 18 ERKEVEKNRRLHMKGLCLKLSSLVPSSSssdhhlrhysssppSSNKDAATQLDQLDSAAAYIKQLR 83
                             5789**********************666***********96666666****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.421482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-111693IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.94E-91694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-51882IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00932088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MAVDGSHTHT TSSGCKMERK EVEKNRRLHM KGLCLKLSSL VPSSSSSDHH LRHYSSSPPS  60
SNKDAATQLD QLDSAAAYIK QLRGRIHDLK RRKQAALSLS GGTGGCSSSV SAGDYKAHTT  120
TSLPVIEVRH QDGTLDVALA SEAGRPFRLH EVMAMLEQEG AEVVSASFSV VGDKIFYTLH  180
SQALCPRIGR VAQRLRGLAA AAAATVSTLL T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201035.11e-113uncharacterized protein LOC109786888
TrEMBLA0A3B6FEZ61e-151A0A3B6FEZ6_WHEAT; Uncharacterized protein
STRINGTraes_3B_612C9C78B.21e-151(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-13bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]