PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF035900060CFD_t1
Common NameTRAES_3BF035900060CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 254aa    MW: 26320.4 Da    PI: 9.7606
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF035900060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-0580102123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              +kC++C + F ++  L  H++ H
  TRAES3BF035900060CFD_t1  80 FKCNYCQRKFYTSQALGGHQNAH 102
                              89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.21E-776107No hitNo description
PROSITE profilePS5015711.57280107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGHSSRTASM EAVKGEGEEV QPANEALSAP SLELNLVGAL GLGENAAAEA KGKELVVAAG  60
PSVEPKAAVV VAGGENRRTF KCNYCQRKFY TSQALGGHQN AHKRERSIAK RAAAGRGGDP  120
AAGLYGPADH HLRYATAWPY SAAGRSFLGR GSATAPFYGM QMHHPGWSAA PQPYLAGLAR  180
LAGAHRPMYR PEAYGYGASS RAPISAFPEA APAVNGISQA GGSGSGSGNG RDHGINELKK  240
KEETASNIDL TLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180898.11e-147zinc finger protein 4-like
TrEMBLA0A077S8790.0A0A077S879_WHEAT; Uncharacterized protein
STRINGMLOC_69653.11e-111(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130642230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-14zinc-finger protein 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]