PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF042800070CFD_t1
Common NameTRAES_3BF042800070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 95aa    MW: 10903.7 Da    PI: 6.7795
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF042800070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.2e-112741998
                             -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                       B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                             p +f++++  +   +++ +l++ +  sW+v++  +   gr +l +GW  +v  +++k g +v+Fkl      +l+v +f+
  TRAES3BF042800070CFD_t1  2 PLDFTKHFVAV---PTEFKLRNNTDCSWKVTV--KLMNGRLTLDQGWATYVAVHQIKIGYMVTFKLLT--PDTLRVIIFD 74
                             66777555555...4579**************..7777789************************865..4446777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.378176IPR003340B3 DNA binding domain
PfamPF023622.7E-8274IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-12675IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-12675IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MPLDFTKHFV AVPTEFKLRN NTDCSWKVTV KLMNGRLTLD QGWATYVAVH QIKIGYMVTF  60
KLLTPDTLRV IIFDDDDIEV VNKCGKHDEA FAAKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-160HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146207.11e-56putative B3 domain-containing protein Os03g0621600
TrEMBLA0A077S7P81e-64A0A077S7P8_WHEAT; Uncharacterized protein
TrEMBLA0A446QD331e-64A0A446QD33_TRITD; Uncharacterized protein
STRINGEMT067224e-56(Aegilops tauschii)
STRINGTRIUR3_20025-P11e-58(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1723937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.19e-07B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]