PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF043500070CFD_t1
Common NameTRAES_3BF043500070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 228aa    MW: 25282.6 Da    PI: 8.4371
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF043500070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.3e-1984138256
                              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              rk+ ++tkeq+  Le +F++++++s+++++ LA++l+L  rqV vWFqNrRa+ k
  TRAES3BF043500070CFD_t1  84 RKKLRLTKEQTALLEGHFKEQSTLSHKQKASLARQLSLRPRQVEVWFQNRRARTK 138
                              78889************************************************98 PP
2HD-ZIP_I/II119.12.4e-3884172190
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl+keq +lLE +F+e+++L++++K++lar+L l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++
  TRAES3BF043500070CFD_t1  84 RKKLRLTKEQTALLEGHFKEQSTLSHKQKASLARQLSLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQH 169
                              69************************************************************************************ PP

              HD-ZIP_I/II  87 Lree 90 
                              Lr +
  TRAES3BF043500070CFD_t1 170 LR-A 172
                              *9.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-1868138IPR009057Homeodomain-like
SuperFamilySSF466895.13E-1969141IPR009057Homeodomain-like
PROSITE profilePS5007117.36280140IPR001356Homeobox domain
SMARTSM003899.6E-1682144IPR001356Homeobox domain
PfamPF000461.8E-1684138IPR001356Homeobox domain
CDDcd000862.72E-1584141No hitNo description
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PfamPF021832.5E-10140173IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-20140183IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MFMAQEEAGL ALGLSLGLGA GHHHHHLLQQ KEAAPLEPCL SLSLAGAGAV KREEEEDEER  60
ALIYCSSAAD DHIEGYNSSS GGSRKKLRLT KEQTALLEGH FKEQSTLSHK QKASLARQLS  120
LRPRQVEVWF QNRRARTKLK QTEVDCELLK RCCETLTEEN RRLHRELQHL RALHHHQHHH  180
HHPAAAFFIP SAATVASVCP SCPGAPPAHA ADRPATKRSF FATKSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288SRKKLRL
2132140RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188208.11e-112homeobox-leucine zipper protein HOX15-like
SwissprotA2Z4C41e-55HOX15_ORYSI; Homeobox-leucine zipper protein HOX15
SwissprotQ7G7371e-55HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15
TrEMBLW5CP511e-163W5CP51_WHEAT; Uncharacterized protein
STRINGTraes_3B_00712301E.11e-164(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.13e-42HD-ZIP family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]