PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF043700070CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 126aa    MW: 13245.5 Da    PI: 4.7914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF043700070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.26.9e-188106238340
                     GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                              +v+v++++ad +s+s+++r++ ++++++ lfd+l++++pr+s  r   E++ +g+ei++vv   g+e   r e+ ++  er+++ G
  TRAES3BF043700070CFD_t1   8 LVTVTDEDADQDSPSLATRIAGCFNFHWILFDALDTSAPRDSPRRLEHEAA-VGQEIESVVGDDGTE---RSESGARLAERMRRKG 89 
                              79***********************************************99.**************9...7777778889****** PP

                     GRAS 324 Fkpvplsekaakqakll 340
                              F  v ++e+++++a++ 
  TRAES3BF043700070CFD_t1  90 FAGVGFGEHEVADARAA 106
                              ************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509859.8911120IPR005202Transcription factor GRAS
PfamPF035142.4E-158106IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MASGATGLVT VTDEDADQDS PSLATRIAGC FNFHWILFDA LDTSAPRDSP RRLEHEAAVG  60
QEIESVVGDD GTERSESGAR LAERMRRKGF AGVGFGEHEV ADARAAAMQG ERGGARRGAA  120
RQAAAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154951.11e-56scarecrow-like protein 32
TrEMBLA0A446Q7483e-83A0A446Q748_TRITD; Uncharacterized protein
STRINGMLOC_41071.19e-58(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122273238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.13e-16GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]