PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF046300130CFD_t1
Common NameTRAES_3BF046300130CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 182aa    MW: 18620.1 Da    PI: 10.4927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF046300130CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20106158156
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                              ++y+GVr+++ +g+++AeIrdps    r  +r +lg+fgtaeeAa a+++a+ +l+g+
  TRAES3BF046300130CFD_t1 106 PHYRGVRRRP-WGKYAAEIRDPS----RpgTRLWLGTFGTAEEAAVAYDRAAFRLRGA 158
                              68********.**********96....355**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-14106157IPR001471AP2/ERF domain
CDDcd000183.49E-28106167No hitNo description
SMARTSM003801.8E-35107171IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-23107166IPR016177DNA-binding domain
PROSITE profilePS5103224.144107165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-31107165IPR001471AP2/ERF domain
PRINTSPR003678.4E-11108119IPR001471AP2/ERF domain
PRINTSPR003678.4E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MPLSLGADHL ATPGARAPPA RVGAAMGMDT SLSLGGAAAY LPLNENDSLD MLLFDVLREA  60
SAVAAASPSS SSSSPPTKMA AAIAASGPAT VEGGRACAAG RAAERPHYRG VRRRPWGKYA  120
AEIRDPSRPG TRLWLGTFGT AEEAAVAYDR AAFRLRGAKA LLNFPPAVGA HEARRGGADG  180
AR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-29107172570ATERF1
3gcc_A1e-29107172570ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid. {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:11768541, ECO:0000269|PubMed:11971137}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: The stronger expression mediated by Pseudomonas syringae tomato during an incompatible interaction (avirulent T1 avrPto strain) than during a compatible one (virulent T1 strain) requires the resistance PTO-R as well as the Pseudomonas resistance and fenthion sensitivity (PRF) gene products. This induction is independent of ethylene (ET), jasmonate (JA) and salicylic acid (SA), and subsequent transcription of PTI5 does not require de novo protein synthesis. Also induced by Xanthomonas oryzae strain PXOA avrXa10, by Pseudomonas fluorescens strain 2-79, by PTO and by cycloheximide. Seems to not be influenced by abiotic stresses (ET, SA, JA and wounding). {ECO:0000269|PubMed:10607299, ECO:0000269|PubMed:9878629}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167435.17e-75pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046813e-37PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A077S2V31e-122A0A077S2V3_WHEAT; Uncharacterized protein
TrEMBLA0A446PZI21e-122A0A446PZI2_TRITD; Uncharacterized protein
STRINGXP_010686479.13e-40(Beta vulgaris)
STRINGXP_004485859.14e-40(Cicer arietinum)
STRINGPavir.Ea03031.1.p4e-40(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.15e-25ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]