PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF047700010CFD_t1
Common NameTRAES_3BF047700010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 383aa    MW: 41623 Da    PI: 6.1371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF047700010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.6e-13203248555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h + Er+RR+++N++f++Lr+llP++      K +K ++L+kA  Y+k L+
  TRAES3BF047700010CFD_t1 203 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLTKAAGYLKTLE 248
                              7789*********************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-17200266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-18203265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-12203252No hitNo description
PfamPF000101.4E-10203248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MAADIAGLHS ALADPFWPAD LDLMVSTHEV EGMADMDASG FFVGGGDDRF MLPSSTTSSL  60
SSKRSLSLDS GGSSGSGSFS LDLADASRYQ APALPVPHNP LAGAVDHDDE AIMRAMMAVM  120
SSSSASPSSS ASSHPQPFRR ERDSNMQQQS AAMAPQLRGG RSGHVMVKSS LSMSPERSSS  180
GGRGQQQEDP TRAASGNTGQ LYHMMSERKR REKLNDSFHT LRSLLPPCSK KDKTTVLTKA  240
AGYLKTLEAQ VSELEEKNNK LEKHIPTYDC EEDVPHQQRR QRAKVQITKA ASDEVVNLTV  300
MVMVECDVVE LVLRILECLR WMEQVSVMSV DADTYSPQVL LKAIASIKLR IVDNDWNQAL  360
FHEAMTKAVN DATASRPPLV LTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERKRRE
2207212RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3686840.0AK368684.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2078B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150412.10.0putative transcription factor bHLH041
TrEMBLA0A077S0G30.0A0A077S0G3_WHEAT; Uncharacterized protein
STRINGTraes_3B_AC3752E39.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.15e-23bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]