PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF053500190CFD_t1
Common NameTRAES_3BF053500190CFD_c1, TRAES_3BF053700010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 231aa    MW: 24942.3 Da    PI: 9.8596
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF053500190CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.13.6e-32271491128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWka 85 
                              lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdLp +    + e yfF+  ++    +g  + ra  sg+W+a
  TRAES3BF053500190CFD_t1  27 LPIGFRFRPTDEELLLHYLRRKALSCPLPA-DIIPVADLARLHPWDLPGE---ADGERYFFHLPATGCWrKGGGTGRAGGSGVWRA 108
                              699***************************.99***************43...45678888877766542799************* PP

                      NAM  86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              +gk++ v++   g+ +g k+tLvf    +p g +t W mheyrl
  TRAES3BF053500190CFD_t1 109 SGKERLVVAPrCGRPIGAKRTLVFC---RPGGARTGWAMHEYRL 149
                              *******99878999*********9...7999**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4520177IPR003441NAC domain
PROSITE profilePS5100542.53427177IPR003441NAC domain
PfamPF023653.1E-2028149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MALPAERRTE EAAVTGGCRV PAGQGGLPIG FRFRPTDEEL LLHYLRRKAL SCPLPADIIP  60
VADLARLHPW DLPGEADGER YFFHLPATGC WRKGGGTGRA GGSGVWRASG KERLVVAPRC  120
GRPIGAKRTL VFCRPGGART GWAMHEYRLL PAGLAAYATA KSLHAAKDWV VCRVFKKATP  180
ARRDTAGRRS RGDADMTPAS PSPASSCVTE SRSGMEEDDD ETASNSPRRE H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-302118311171NO APICAL MERISTEM PROTEIN
1ut4_B3e-302118311171NO APICAL MERISTEM PROTEIN
1ut7_A3e-302118311171NO APICAL MERISTEM PROTEIN
1ut7_B3e-302118311171NO APICAL MERISTEM PROTEIN
3swm_A3e-302118314174NAC domain-containing protein 19
3swm_B3e-302118314174NAC domain-containing protein 19
3swm_C3e-302118314174NAC domain-containing protein 19
3swm_D3e-302118314174NAC domain-containing protein 19
3swp_A3e-302118314174NAC domain-containing protein 19
3swp_B3e-302118314174NAC domain-containing protein 19
3swp_C3e-302118314174NAC domain-containing protein 19
3swp_D3e-302118314174NAC domain-containing protein 19
4dul_A3e-302118311171NAC domain-containing protein 19
4dul_B3e-302118311171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184279.11e-145NAC domain-containing protein 83-like
TrEMBLA0A077S6J81e-165A0A077S6J8_WHEAT; Uncharacterized protein
TrEMBLA0A446QB691e-165A0A446QB69_TRITD; Uncharacterized protein
STRINGPavir.Eb03721.1.p2e-72(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82333047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-37NAC domain containing protein 83
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]