PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF057600060CFD_t1
Common NameTRAES_3BF057600060CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 261aa    MW: 29203.4 Da    PI: 6.1041
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF057600060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2189149257
                              T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              r+R+t+t+ ql++Le+ F + n +ps++++++++++l    +++e++V++WFqNrRa+ k+
  TRAES3BF057600060CFD_t1  89 RQRWTPTQMQLQILESIFDQgNGTPSKQKIKDITAELsqhgQISETNVYNWFQNRRARSKR 149
                              89*****************99**************************************97 PP
2Wus_type_Homeobox103.21.8e-3388151265
        Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                              ar+RWtPt+ Q++iLe+++++G  tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq
  TRAES3BF057600060CFD_t1  88 ARQRWTPTQMQLQILESIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQ 151
                              789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-1783154IPR009057Homeodomain-like
PROSITE profilePS5007114.81985150IPR001356Homeobox domain
SMARTSM003895.3E-1487154IPR001356Homeobox domain
SuperFamilySSF466893.08E-1888155IPR009057Homeodomain-like
PfamPF000463.8E-1989149IPR001356Homeobox domain
CDDcd000862.57E-1389151No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MEWDKASAAA AAGEPAEERG EALGYVKVMT DEQMEVLRKQ ISIYATICEQ LVEMHRALTA  60
HQDSIAGMRL GNLYCDPLMV HGGHKITARQ RWTPTQMQLQ ILESIFDQGN GTPSKQKIKD  120
ITAELSQHGQ ISETNVYNWF QNRRARSKRK QAASSLPSNT ESEAEGDEDS PTDKKPRSDG  180
SQQQSMAARA HNPERISEMH RHFDAAEREQ VRGPMYGSGN DSGARPSGGL GQMSFYENVM  240
SNPRIDQFFQ YRTGESFDMS G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142150RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638220.0AK363822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2019D08.
GenBankAK3654190.0AK365419.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034B06.
GenBankAK3657140.0AK365714.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2036K10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188039.10.0WUSCHEL-related homeobox 8-like
SwissprotQ5QMM31e-124WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A077S1680.0A0A077S168_WHEAT; Uncharacterized protein
TrEMBLA0A446Q3I00.0A0A446Q3I0_TRITD; Uncharacterized protein
STRINGEMT312340.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38983776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.13e-62WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]