PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF058500060CFD_t1
Common NameTRAES_3BF058500060CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 368aa    MW: 38675.1 Da    PI: 8.479
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF058500060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33167224259
                              --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp vv++tYeg+H+h+
  TRAES3BF058500060CFD_t1 167 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCVVKKRVERSFQDPAVVITTYEGKHTHP 224
                              8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.9E-35151226IPR003657WRKY domain
SuperFamilySSF1182901.83E-29158226IPR003657WRKY domain
PROSITE profilePS5081132.214161226IPR003657WRKY domain
SMARTSM007745.7E-39166225IPR003657WRKY domain
PfamPF031068.7E-26167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSGEFQFHDE LASLFTQRPG PGMQQQEQQA SWLADYLQTP MDYDLLCRAL ELPAAEDVVK  60
RELVVDTTPS GGALTPSGGG GTPNATSSMS SSSSEAGGGL CAGEGDSAGR CKKEDGDGED  120
GKGGDEGDKS KKGSSAAAKG GKAGKGEKRP RQPRFAFMTK SEVDHLEDGY RWRKYGQKAV  180
KNSPYPRSYY RCTTQKCVVK KRVERSFQDP AVVITTYEGK HTHPIPSALR GSTHLLAAQA  240
AHLHHQHHGH LGMLPQMGMG GRAGSPFGRS SGGGIDVLGG LLQPRAHHGM TAPMAGAGAG  300
HQAPTQGLTG SIRSVASATA TASSPPSLQM QHFMAPDFGL LQDMLPSFIH GAGGNSDNQP  360
SSPYGKLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27157227878Probable WRKY transcription factor 4
2lex_A1e-27157227878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00168DAPTransfer from AT1G29860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3580520.0AK358052.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1067K13.
GenBankAK3668370.0AK366837.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2047E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188507.10.0probable WRKY transcription factor 48
TrEMBLA0A1S5S7J50.0A0A1S5S7J5_TRITU; WRKY-like protein
TrEMBLA0A446PV350.0A0A446PV35_TRITD; Uncharacterized protein
TrEMBLW5CRZ10.0W5CRZ1_WHEAT; Uncharacterized protein
STRINGTraes_3B_283845875.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-49WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]