PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF059800010CFD_t1
Common NameTRAES_3BF059800010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 114aa    MW: 12862.5 Da    PI: 4.4791
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF059800010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.6e-117397126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                             +ktelC+ +   G C+yG+rC+FaHg
  TRAES3BF059800010CFD_t1 73 QKTELCNKWEG-GACSYGGRCRFAHG 97
                             69*******98.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-1169100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9767299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.83E-772100IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-77298IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-87397IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MDFFRILENV FSVWFRLNCC PTVPAEPPNV LCLRCAFFQL LYWFSLHTDQ AGEDEAKGDG  60
EVVELEAYRQ GTQKTELCNK WEGGACSYGG RCRFAHGLQD DGFLISLTNQ GVQG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-106HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077S0I27e-80A0A077S0I2_WHEAT; Uncharacterized protein
TrEMBLA0A446PQ897e-80A0A446PQ89_TRITD; Uncharacterized protein
STRINGTraes_3B_9441F2297.13e-37(Triticum aestivum)
STRINGTraes_5BL_D177DD0F9.24e-38(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-15C3H family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]