PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF061900010CFD_t1

Common Name

TRAES_3BF061900010CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 197aa MW: 22458.8 Da PI: 6.0016

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF061900010CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.3	3.1e-07	30	55	1	26
TSSS-HHHHHHHHHHHHHTTTT-HHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWkt 26 +g+ T+eEde+++d+v ++G+ W+ TRAES3BF061900010CFD_t1 30 KGPLTQEEDEKIIDLVSKYGPTKWSH 55 6899********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.03E-10	6	55	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-5	6	36	IPR009057	Homeodomain-like
CDD	cd00167	6.34E-4	34	55	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.9E-7	37	56	IPR009057	Homeodomain-like
SMART	SM00212	1.9E-32	50	175	No hit	No description
SuperFamily	SSF54495	3.77E-36	57	176	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
CDD	cd00195	1.23E-36	57	170	No hit	No description
Gene3D	G3DSA:3.10.110.10	3.2E-9	57	88	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
PROSITE profile	PS50127	24.166	57	164	IPR000608	Ubiquitin-conjugating enzyme E2
Pfam	PF00179	2.0E-21	94	169	IPR000608	Ubiquitin-conjugating enzyme E2
Gene3D	G3DSA:3.10.110.10	3.6E-33	94	174	IPR016135	Ubiquitin-conjugating enzyme/RWD-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MAGNAELFLN RTGVQYLHPW QKVLNPELIK GPLTQEEDEK IIDLVSKYGP TKWSHCKDLQ 60 KDPPTSCSAG PVGEDMFHWQ ATIMGPSDAR LLVVSFRTKV FHPNINNSND NICLDILKEL 120 WSPALIIFQV LLSICSLLMD PNPDDPLVPE ITHMYKTDQA KYESTARTWT QKYATGGFIG 180 KQCRERYSFD CFIFMVC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4x57_A	4e-63	57	176	42	179	Ubiquitin-conjugating enzyme E2 8
4x57_C	4e-63	57	176	42	179	Ubiquitin-conjugating enzyme E2 8
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Accepts the ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-113	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150452.1	1e-81	uncharacterized protein LOC109735650
Swissprot	Q94F47	3e-64	UBC28_ARATH; Ubiquitin-conjugating enzyme E2 28
TrEMBL	A0A077RQC2	1e-147	A0A077RQC2_WHEAT; Uncharacterized protein
STRING	EMT28005	1e-80	(Aegilops tauschii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	2e-19	myb domain protein 3r-5

Publications ? help Back to Top
Kraft E, et al. Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. Plant Physiol., 2005. 139(4): p. 1597-611 [PMID:16339806] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]