PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF062000020CFD_t1
Common NameTRAES_3BF062000020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 202aa    MW: 23279.7 Da    PI: 8.7361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF062000020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.22.9e-18281646128
                      NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvka...eekewyfFskrdkkyatgkrknratk 79 
                              +F+Pt++elv ++L+++++g   +++ ++ e+d + + Pw+L +         +  +   ++ + yfF+ r++ ++ + r++    
  TRAES3BF062000020CFD_t1  28 EFEPTEDELVLHFLRPQLRGFAPRVAGAVVEADPCAAPPWELLArxxpwellaR--HgllRRGHGYFFAARRRGKRAQARRTPEGG 111
                              7*********************9**999**************744677776542..123244477*****9998887777777778 PP

                      NAM  80 sgyWkatgkdkevlskkgelvglkktLvfy....kgrapkgektdWvmheyrl 128
                               g+W ++g+ ++ +s ++  v  + +++ y    +  a+  ++t Wvm ey++
  TRAES3BF062000020CFD_t1 112 GGTWMHSGNREDRCSMTELGVVARWSMTRYclyrRDGAQGRRSTGWVMSEYEI 164
                              9********99999987777777777776655543444444689*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.61123190IPR003441NAC domain
PfamPF023652.5E-1327164IPR003441NAC domain
SuperFamilySSF1019418.37E-2428189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEEQGINLAG AGGGEVKQEV GEEEEEIEFE PTEDELVLHF LRPQLRGFAP RVAGAVVEAD  60
PCAAPPWELL ARXXPWELLA RHGLLRRGHG YFFAARRRGK RAQARRTPEG GGGTWMHSGN  120
REDRCSMTEL GVVARWSMTR YCLYRRDGAQ GRRSTGWVMS EYEITDPRCY RRADDGDEDQ  180
YWVLCHVRRS IRKNLKPRSR RR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194102ARRRGKRAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201281.11e-110NAC transcription factor NAM-B1-like
TrEMBLA0A077RR921e-143A0A077RR92_WHEAT; Uncharacterized protein
STRINGMLOC_81739.11e-103(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137612528
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]