PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF065400200CFD_t1

Common Name

TRAES_3BF065400200CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 232aa MW: 26303 Da PI: 9.1425

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF065400200CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.2	1.9e-15	136	219	1	90
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +++s+v+ +l lp +f+ + g ++ t+tlede+g +++ ++ k++ l++GW++F+ +++L +gD +vF+ TRAES3BF065400200CFD_t1 136 FVKPMKQSHVTGGFWLGLPSHFCGLYlpG----SDDTITLEDEEGVEYKTRYLALKTG----LSAGWRRFALDHNLVDGDCLVFEW 213 89*******************888643....4569***********666666....*********************5 PP -.SSSEE CS B3 85 d.grsef 90 + + ++f TRAES3BF065400200CFD_t1 214 VvW-NTF 219 524.444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-17	132	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-21	132	223	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-24	134	224	No hit	No description
SMART	SM01019	6.5E-18	136	229	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.2E-13	136	222	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.433	136	227	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MAGALAYEEQ RRRQMEENDR KLEELGLHQL SAAVREAAGR KPSPVRLEAK SVKPKQVPRD 60 APVRQSSRVA SLPKQPKYRY EVLPPFGITC RTNGRGSSTR SDIINRVDAT DEARLHANSE 120 AQELLRKLVP GGNPSFVKPM KQSHVTGGFW LGLPSHFCGL YLPGSDDTIT LEDEEGVEYK 180 TRYLALKTGL SAGWRRFALD HNLVDGDCLV FEWVVWNTFY VRFLICYYAF RC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-156	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020160679.1	2e-83	B3 domain-containing protein Os06g0194400-like
Swissprot	Q69V36	1e-68	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A080YUW7	1e-172	A0A080YUW7_WHEAT; Uncharacterized protein
STRING	EMT09213	1e-137	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-46	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]