PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF068500020CFD_t1
Common NameTRAES_3BF068500020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25833.1 Da    PI: 5.2524
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF068500020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.66e-17961151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS..EEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg..klyeyss 51
                             kri n+  r  tf kRr g+lKKA EL vLC+++  +++f  +g  kl++y+s
  TRAES3BF068500020CFD_t1  9 KRIHNDVSRRATFGKRRRGLLKKARELAVLCGVDLGLLVFDDDGagKLFDYCS 61
                             79**************************************9985337888875 PP
2K-box423.8e-15891771097
                    K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLes.LslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                               + +++ l   +a L++e + L+ + R+  GedL s  +  eL  Leq+Le+ l ++R+ K++ l +q++e+ +k + l+++n  L
  TRAES3BF068500020CFD_t1  89 VDDQQQPLADIIAGLRREHDRLEVSVRRQTGEDLPSaATAAELDDLEQRLERVLGEVREMKDKPLEQQLDESYHKVHTLEDQNSFL 174
                              55667888888999********************7725789********************************************* PP

                    K-box  95 rkk 97 
                              r+ 
  TRAES3BF068500020CFD_t1 175 RRL 177
                              985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.764163IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-25162IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-24288IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-15323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-181059IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-152338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-153859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-1591176IPR002487Transcription factor, K-box
PROSITE profilePS5129710.55193184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGRTEMKR IHNDVSRRAT FGKRRRGLLK KARELAVLCG VDLGLLVFDD DGAGKLFDYC  60
SPNTSWSELI ERYESITNHK FQFQGINHVD DQQQPLADII AGLRREHDRL EVSVRRQTGE  120
DLPSAATAAE LDDLEQRLER VLGEVREMKD KPLEQQLDES YHKVHTLEDQ NSFLRRLMGE  180
EGQQRAAVEA SAVAPKLPAT AFGGSFPEVE EEELTALRLW PRQLPDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-103HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153391.11e-117MADS-box transcription factor 29-like
TrEMBLA0A077RQ621e-165A0A077RQ62_WHEAT; Uncharacterized protein
TrEMBLA0A446PEE91e-165A0A446PEE9_TRITD; Uncharacterized protein
STRINGEMT148781e-112(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1951846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.26e-16MIKC_MADS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]