PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF071100100CFD_t1

Common Name

TRAES_3BF071100100CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HSF

Protein Properties

Length: 322aa MW: 35554.2 Da PI: 5.4354

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF071100100CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	99.7	2.8e-31	21	112	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 F+ k+y+++ d++++ l++w +++nsf+v+d f++ +Lp +Fkh n++SFvRQLn YgF+kv+ ++ weF+h+sF TRAES3BF071100100CFD_t1 21 FVAKTYQMVCDPRTDALVRWGRDNNSFLVTDVAGFSQLLLPCFFKHGNLSSFVRQLNSYGFRKVHPDR---------WEFAHESFL 97 9**************************************************************999.........***** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 88 kgkkellekikrkks 102 +g+++ll +i r+k+ TRAES3BF071100100CFD_t1 98 RGQTHLLPRIVRRKK 112 **********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	2.7E-47	17	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	2.5E-33	18	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	4.9E-31	19	110	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	1.6E-15	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.1E-27	21	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-15	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	60	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.6E-15	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MDGLHTELAL GLIGELETAP FVAKTYQMVC DPRTDALVRW GRDNNSFLVT DVAGFSQLLL 60 PCFFKHGNLS SFVRQLNSYG FRKVHPDRWE FAHESFLRGQ THLLPRIVRR KKRGEASSSA 120 LVGSALVGSG EQYVVANIGE EVEEEEDDEG REALLEEVRR LRQEQTAVGE QLAQMARRLQ 180 ATERRSDRLM PLLARLDEDP RATSLHLLQQ AAEKKRQHTQ LHSRDFASFP IAPPLHPAPS 240 PAPSPLLALG DEAMCGARVG QWAEPMPLKL PTLEEPSTSS GVQQVPEFEG GGRDSGSGTG 300 ITDSGTAVEI PFPFCLLGQC FF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-22	3	110	11	129	Heat shock factor protein 1
5d5v_B	3e-22	3	110	11	129	Heat shock factor protein 1
5d5v_D	3e-22	3	110	11	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF208553	0.0	KF208553.1 Triticum aestivum heat shock factor C1e (HsfC1e) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195270.1	0.0	heat stress transcription factor C-1a-like
Swissprot	Q6VBA4	1e-113	HFC1A_ORYSJ; Heat stress transcription factor C-1a
TrEMBL	A0A077RQP7	0.0	A0A077RQP7_WHEAT; Uncharacterized protein
STRING	Traes_3B_A26CF00EB.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP121	37	394

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24520.1	4e-44	heat shock transcription factor C1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]