PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF073700060CFD_t1
Common NameTRAES_3BF073700060CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 243aa    MW: 26016.9 Da    PI: 5.3398
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF073700060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1758106355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++aa+++++g
  TRAES3BF073700060CFD_t1  58 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDAAALSIKG 106
                              9****998.**********843...6***********************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.4E-3157115IPR001471AP2/ERF domain
PROSITE profilePS5103222.65557114IPR001471AP2/ERF domain
SMARTSM003801.3E-3457120IPR001471AP2/ERF domain
PfamPF008472.6E-1257106IPR001471AP2/ERF domain
CDDcd000181.90E-2058116No hitNo description
SuperFamilySSF541712.68E-2058115IPR016177DNA-binding domain
PRINTSPR003673.1E-95869IPR001471AP2/ERF domain
PRINTSPR003673.1E-98096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAASEQSSES SSTSCTSSYS TSSCSPRADD KKRNGGGKRK RAAAADEEPA PAAAAASYRG  60
VRMRAWGKWV SEIREPRKKS RIWLGTFPCP EMAARAHDAA ALSIKGARAV LNFPDLAPAL  120
PRPASLAPCD VQAAAARAAL MHDHDHQCCS ASTSPAAAPD SARGNAPAPC DQPAARDEPE  180
HEPPFQPSQG NEQQLTAAQV EMVFDELAPL WVENVVDFAP SDHCWTAYDC LDPIGFQPLL  240
WEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1652114972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538520.0DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds.
GenBankGU7850080.0GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds.
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183719.11e-119ethylene-responsive transcription factor ERF039-like
TrEMBLA0A3B6FMY01e-174A0A3B6FMY0_WHEAT; Uncharacterized protein
TrEMBLE2EBX91e-175E2EBX9_TRITD; Drought responsive element binding transcription factor 2
TrEMBLQ27W811e-175Q27W81_WHEAT; AP2 domain transcription factor TaDREB2
STRINGTraes_3B_82E1F5484.11e-176(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.14e-32ERF family protein
Publications ? help Back to Top
  1. Lopato S, et al.
    Isolation of plant transcription factors using a modified yeast one-hybrid system.
    Plant Methods, 2006. 2: p. 3
    [PMID:16504065]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]