PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF073700150CFD_t1
Common NameTRAES_3BF073700150CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 251aa    MW: 27963.3 Da    PI: 8.2103
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF073700150CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.71.2e-171151343
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                             i n s r  tf kRr g++KKA+EL +LCd++++v+++++ 
  TRAES3BF073700150CFD_t1 11 IPNVSTRRGTFKKRRRGLMKKASELAILCDVRACVLVYGEG 51
                             779999********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.502150IPR002100Transcription factor, MADS-box
CDDcd002662.30E-29285No hitNo description
SuperFamilySSF554552.62E-23395IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-11323IPR002100Transcription factor, MADS-box
PfamPF003198.5E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MARKKVTLQY IPNVSTRRGT FKKRRRGLMK KASELAILCD VRACVLVYGE GETTPEVFPS  60
HDGAVKILNI FKKMPELEQC KKMMNQEGFL RQRIDKLRDQ VHKFGREFRE QEIRTLLLKA  120
MCGNLPDLVS LNIEELTSVG WKVEMLLNGI GDRITKLQGQ PPAPHMIDSM DMGSPAINQA  180
PPAQEGWLDM VRSGGDLSAL VCSGYFGSHE ATSTSSSVGY SGGDMMQPFD LGFGWQWDTD  240
LGASSSLFLP M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVTLQYIPNVSTRRGTFKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199163.11e-168agamous-like MADS-box protein AGL80
TrEMBLA0A077RXW00.0A0A077RXW0_WHEAT; Uncharacterized protein
STRINGEMT028021e-134(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-31AGAMOUS-like 80
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]