PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF074100010CFD_t1
Common NameTRAES_3BF074100010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 212aa    MW: 22938.7 Da    PI: 6.1067
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF074100010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26054.24.1e-176312440101
                   DUF260  40 snvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                              +nv kll+++p   r+d++++++yeA+ar+ dPvyG+vg+il+lq+q++ l+ +l++l+++l
  TRAES3BF074100010CFD_t1  63 NNVAKLLSRVPVALRRDTARTVCYEAQARIADPVYGCVGTILALQHQVALLQGQLSVLQTQL 124
                              79******************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.61723124IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-1863121IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDWPGTGPEG SEKAARPHVG TDDSYSSRSD LQRRRFAGRY TNGGRPGSLL AQKLVGASLP  60
LINNVAKLLS RVPVALRRDT ARTVCYEAQA RIADPVYGCV GTILALQHQV ALLQGQLSVL  120
QTQLFNCRLA LASTHPDSAE QLALLQPAYS AASAPSQMVN YDDLPQAVDF MDVEPQMRGL  180
ESLQLSQPPH RDEDESQGVS PFSDNAGGQR QL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-176HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151201.11e-101LOB domain-containing protein 20-like
TrEMBLA0A077S3S41e-152A0A077S3S4_WHEAT; Uncharacterized protein
STRINGBRADI2G51310.12e-84(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-25LOB domain-containing protein 20
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]