PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF075600040CFD_t1
Common NameTRAES_3BF075600040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 174aa    MW: 18425.8 Da    PI: 10.3625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF075600040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-193181256
                      AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  TRAES3BF075600040CFD_t1 31 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 81
                             7********.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.78E-303089No hitNo description
SMARTSM003801.6E-343194IPR001471AP2/ERF domain
SuperFamilySSF541714.45E-223189IPR016177DNA-binding domain
PROSITE profilePS5103221.9443188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-313190IPR001471AP2/ERF domain
PfamPF008471.0E-123180IPR001471AP2/ERF domain
PRINTSPR003674.2E-103243IPR001471AP2/ERF domain
PRINTSPR003674.2E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MDPVLRGAAS LGGGHGQGGT GGGGGGGGEA HYRGVRKRPW GRYAAEIRDP WKKTRVWLGT  60
FDTPVEAALA YDRAARTLRG AKAKTNFPDH AHHHHHRPPM QQPVPFGGVD LNFPSPWHFV  120
YFSRPPAAPA PRLPQEASPA VSVPPSTALE LGVAPGPAGL PFDLNEPPSL LFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-213188563ATERF1
3gcc_A3e-213188563ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172360.12e-88ethylene-responsive transcription factor 12-like
TrEMBLA0A077RV531e-120A0A077RV53_WHEAT; Uncharacterized protein
TrEMBLA0A446Q2981e-120A0A446Q298_TRITD; Uncharacterized protein
STRINGMLOC_66843.18e-76(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-34ERF domain protein 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]