PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF075800120CFD_t1
Common NameTRAES_3BF075800120CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 261aa    MW: 28461.3 Da    PI: 8.066
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF075800120CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.65.2e-12556147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                             +++WT eE+e l ++v ++G g W+tI +          R+  ++k++w+++
  TRAES3BF075800120CFD_t1  5 KQKWTSEEEEALRRGVLKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                             79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.143160IPR017930Myb domain
SuperFamilySSF466898.22E-16258IPR009057Homeodomain-like
SMARTSM007171.2E-7459IPR001005SANT/Myb domain
PfamPF002492.2E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-14556IPR009057Homeodomain-like
CDDcd116601.56E-20656No hitNo description
PROSITE profilePS5150411.752114191IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.107.5E-4119150IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGAPKQKWTS EEEEALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGLGSRDKQR VPRPKAPSSS PSPSPQLLLL PATNNVAEAS PPEDCEKSPQ DDKTPSPKFS  120
MILEALGELK EPNGSEVTTI CNFIEIDKSY KLTDSYAKRA LAPMKDPSLK KKDSAKSSKA  180
AKGQGLFTAA SPALGAAEAA ATKVADAEAK SHLANEHMME VERIGKMAEE TESLLELASE  240
LYERCSRGEV LTILQVAHRE F
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3756190.0AK375619.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3099J10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159639.11e-147single myb histone 4-like isoform X4
SwissprotQ6WLH44e-99SMH3_MAIZE; Single myb histone 3
TrEMBLA0A077S2K00.0A0A077S2K0_WHEAT; Uncharacterized protein
TrEMBLA0A446PW290.0A0A446PW29_TRITD; Uncharacterized protein
STRINGTraes_3B_05774F3AC.21e-153(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92473442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.39e-37telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]