PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF077200070CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 120aa    MW: 12998.1 Da    PI: 9.0434
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF077200070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.83.6e-10546344
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             ie +++r   f+ Rr g+l KA  L  LC++ v v+   ++g
  TRAES3BF077200070CFD_t1  5 IETDRKRRLAFTTRRRGLLDKARQLAALCGVAVTVVCTDPEG 46
                             8999*******************************9887766 PP
2SRF-TF34.91.9e-116399440
                             -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
                   SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                             +n+++r   f +Rr g+l KAe L  LC+a+vav+ +
  TRAES3BF077200070CFD_t1 63 DNERKRGLAFRNRRRGLLEKAEQLAALCGAQVAVVCA 99
                             899*******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-4154IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.643155IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-11352IPR002100Transcription factor, MADS-box
PfamPF003191.1E-10546IPR002100Transcription factor, MADS-box
SMARTSM004320.001460111IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-1261110IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.4046297IPR002100Transcription factor, MADS-box
PfamPF003193.7E-1263101IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MARLIETDRK RRLAFTTRRR GLLDKARQLA ALCGVAVTVV CTDPEGGALT VMETEEGVPA  60
LMDNERKRGL AFRNRRRGLL EKAEQLAALC GAQVAVVCAD PWGGAPTVME TEAGVLARAY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712DRKRRL
2919KRRLAFTTRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A446Q9T54e-78A0A446Q9T5_TRITD; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45722960
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]