PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF078900060CFD_t1
Common NameTRAES_3BF078900060CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 251aa    MW: 26460 Da    PI: 6.2289
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF078900060CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.43.2e-40621611100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+Ca++C++apyf  ++p+kfa+vhk+FGasnv+k+l ++pe er da+sslvyeA+ r+ dPvyG++g i+ lqqq
  TRAES3BF078900060CFD_t1  62 PCAACKLLRRRCAHECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPEPERADAASSLVYEANLRLGDPVYGCMGAISMLQQQ 147
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++ l+ael+++++e
  TRAES3BF078900060CFD_t1 148 VNALEAELQAVRAE 161
                              *********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.93461162IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4062159IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MIFWTSTRER LDEIGKKIKR EPDPASAIAG VVVAVSQTEH HVPRRLGLVG PGIGGAANIA  60
TPCAACKLLR RRCAHECPFA PYFSPHEPHK FAAVHKVFGA SNVSKMLLEV PEPERADAAS  120
SLVYEANLRL GDPVYGCMGA ISMLQQQVNA LEAELQAVRA EIFKHRYRQT GVGVGVGAAN  180
LIVDDDVSAA AAGGFMAPAT SLVHTAGVVS VAEAGQEVDT MPSTATAYAA GQPSSTDYSS  240
LDTSEHDAYF G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-416217111120LOB family transfactor Ramosa2.1
5ly0_B4e-416217111120LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7955610.0AY795561.1 Triticum aestivum LOB1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158005.11e-152LOB domain-containing protein 15-like
SwissprotQ8L5T52e-64LBD15_ARATH; LOB domain-containing protein 15
TrEMBLA0A077S4G80.0A0A077S4G8_WHEAT; Uncharacterized protein
STRINGTraes_3B_8B1C39A0B.11e-179(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26303891
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.14e-64LOB domain-containing protein 15
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]