PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF079200050CFD_t1
Common NameTRAES_3BF079200050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 278aa    MW: 29925.5 Da    PI: 6.6203
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF079200050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.94.6e-152787257
                             T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                             r+R+++++eq+ +Le+ F++   +p ++e +++   l     + +++V++WFqNrR + ++
  TRAES3BF079200050CFD_t1 27 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRLLLerfgAVRDANVFYWFQNRRSRSRR 87
                             89*****************99*************************************997 PP
2Wus_type_Homeobox104.28.6e-342688264
        Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                             +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+  Le++G+++d+NVfyWFQNr++R+r++
  TRAES3BF079200050CFD_t1 26 TRSRWAPKPEQILILESIFNSGMVNPAKDETARIRLLLERFGAVRDANVFYWFQNRRSRSRRR 88
                             689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-132093IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-82292IPR009057Homeodomain-like
PROSITE profilePS5007111.2242388IPR001356Homeobox domain
SMARTSM003896.3E-52592IPR001356Homeobox domain
PfamPF000468.2E-132787IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDQHNHGQAP AHRGGRSSEG GEPTTTRSRW APKPEQILIL ESIFNSGMVN PAKDETARIR  60
LLLERFGAVR DANVFYWFQN RRSRSRRRAR QLQQSCGGTG DADQLSSNAA AAGHGCHGIG  120
TSPYNTMQYG QLCGGVSAAA AAVTGPPRFS VDDADSGDDL FAIPRQMGLM SRGGEDQYGY  180
TATDASQLSY QATVPGTTMP VFINGSVYEV PSTGVLDVAG TFGSDVILVH SSGEILPVNE  240
RGVLMKSLQM GECYYLVIIH FLSSQCQLVL IFYPSPSL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651740.0AK365174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2031K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200216.11e-169WUSCHEL-related homeobox 10-like
SwissprotA2YST12e-83WOX10_ORYSI; WUSCHEL-related homeobox 10
TrEMBLA0A077RHG90.0A0A077RHG9_WHEAT; Uncharacterized protein
TrEMBLA0A446PDB00.0A0A446PDB0_TRITD; Uncharacterized protein
STRINGEMT101681e-173(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.12e-28WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]