PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF081300020CFD_t1
Common NameTRAES_3BF081300020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 248aa    MW: 25721.7 Da    PI: 9.8753
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF081300020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.67.5e-3220119199
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 
                              aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  +e  r++a+++l++eA++r rdP +G+++ ++ l++
  TRAES3BF081300020CFD_t1  20 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRR 105
                              7**********************************************9977766******************************** PP

                   DUF260  86 qleqlkaelallke 99 
                              + + l+ae a+l++
  TRAES3BF081300020CFD_t1 106 ENAVLRAENAALRR 119
                              *******9998775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.36419121IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-2920117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MTGGVNGNGG GGGGGGGGGA CAVCKHQRRK CEPNCELAAY FPANRMNDFR ALHLVFGVAN  60
LTKLIKANAT EAARRRAAET LTWEARWRER DPSEGCYREV SCLRRENAVL RAENAALRRR  120
ADQCACCATT LHHQQQQQQI LLVSAYNNGA RPPGGVLHGA STGVVPGGFY SGNAGAVRAA  180
NGNGPMPARP HVSAPAPQTT MAGYAQGDRH HAASGGANGA GAPRPGAAGQ AEPREKSSAR  240
CDAQRTAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-17161267116LOB family transfactor Ramosa2.1
5ly0_B5e-17161267116LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192106.11e-112uncharacterized protein LOC109777955
TrEMBLA0A077RR221e-178A0A077RR22_WHEAT; Uncharacterized protein
TrEMBLA0A446PM551e-178A0A446PM55_TRITD; Uncharacterized protein
STRINGBRADI2G08480.16e-95(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-15LOB domain-containing protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]