PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF083200080CFD_t1
Common NameTRAES_3BF083200080CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 261aa    MW: 27934.8 Da    PI: 4.702
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF083200080CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.12e-14643542
                      TCR  5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                             +C+C+k++Cl++YC Cf+a ++C+e C+C++C+N+e++
  TRAES3BF083200080CFD_t1  6 HCTCEKTQCLQRYCHCFEAWVFCDEGCSCQGCRNTEDN 43
                             8*********************************9975 PP
2TCR47.24.4e-1584121239
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                              + kgCnC++s+C+k+YCeCf++ + Cs++C+C++C N+
  TRAES3BF083200080CFD_t1  84 HVKGCNCRNSECKKLYCECFKHSVGCSDKCQCTGCANT 121
                              689**********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.5E-9243IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.2833123IPR005172CRC domain
PfamPF036384.5E-11641IPR005172CRC domain
SMARTSM011141.3E-1183124IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.8E-1186121IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDDLPHCTCE KTQCLQRYCH CFEAWVFCDE GCSCQGCRNT EDNSDEVDER AECIMKKKPD  60
AFKPKIIAGD GPGLQQQQQA AGVHVKGCNC RNSECKKLYC ECFKHSVGCS DKCQCTGCAN  120
TFGVKGAAQQ AHSDGPQGTS GGSGETLARS NGSSAIINHD MASQSTETSI MDDIHIPSEL  180
SHMDADLGPP TQALGDGGLE DIIFHTDFEH NIDPQAHQGL AQQADASLSN DANSLLEQGP  240
SKTDTCDLLH HGSQINKLGG I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-11712014120Protein lin-54 homolog
5fd3_B1e-11712014120Protein lin-54 homolog
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-145HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148968.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A077RSM50.0A0A077RSM5_WHEAT; Uncharacterized protein
TrEMBLA0A446PT170.0A0A446PT17_TRITD; Uncharacterized protein
STRINGEMT318840.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.11e-29Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]