PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF091600190CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 247aa    MW: 26022.5 Da    PI: 7.233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF091600190CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.84.6e-18121182108170
                     GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                              g+ ++H++Dfdi++G QW++L+q+La+R +++ +l++T ++s++s++  el+ ++e+L++fA+
  TRAES3BF091600190CFD_t1 121 GAGCIHVLDFDIGMGEQWASLMQELAQR-RPATTLKVTSLVSSASHHPLELQLIHENLSSFAA 182
                              6789***********************9.7889*****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.4921247IPR005202Transcription factor GRAS
PfamPF035141.6E-15121182IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAGVMDPPAL ELDHAMSMMS PAAASLEPSL SPFAPAMEDA EGAPFGHAHS FLLHQQQHHP  60
QPHATFFGAH PSFERAGAEA ACFPGPPPAA GTPLLRFAFY FKEALRLALS PNGETPDGLL  120
GAGCIHVLDF DIGMGEQWAS LMQELAQRRP ATTLKVTSLV SSASHHPLEL QLIHENLSSF  180
AAAGAGGGRG HAGLSWTSHR SSRTRPAGGC DVARRQRRFL GLVAAVGTSN RSRTLVSFLT  240
PIATPNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983724.14e-46scarecrow-like protein 6 isoform X2
TrEMBLA0A446QAJ21e-141A0A446QAJ2_TRITD; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.14e-11GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]