PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF091700010CFD_t1
Common NameTRAES_3BF091700010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 224aa    MW: 23473.1 Da    PI: 7.1315
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF091700010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.2e-20102136135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  TRAES3BF091700010CFD_t1 102 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 136
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-2096153IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.39196132IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.47E-1497137No hitNo description
Gene3DG3DSA:3.30.50.102.5E-17100136IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.80E-13101133No hitNo description
PfamPF003204.9E-18102136IPR000679Zinc finger, GATA-type
PROSITE patternPS003440102127IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MLHEAAPCTC GLLYGSCGGG CSMLFAAAPG DHHYYSKQCG DDGSYASYGG SVDCTLSLGT  60
PSTRRAEAGL PWEAVPSCNG RQDIGPARAD QSNAGAASAR RCANCDTTST PLWRNGPRGP  120
KSLCNACGIR YKKEERRAAA AAVAPTALAS DSGIEYAYGY ARQQQQQQQQ WGCYGPAVAK  180
AASYGMFGDA ATEDGPCLPW GLGVMPSSPA FGSVREMTSL FQYY
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184096.11e-137GATA transcription factor 20-like
SwissprotQ9ZPX09e-28GAT20_ARATH; GATA transcription factor 20
TrEMBLA0A077RTQ71e-162A0A077RTQ7_WHEAT; Uncharacterized protein
TrEMBLA0A446PUC61e-162A0A446PUC6_TRITD; Uncharacterized protein
STRINGMLOC_5372.11e-139(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.15e-27GATA transcription factor 20
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]