PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF093300030CFD_t1

Common Name

TRAES_3BF093300030CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 268aa MW: 29087.1 Da PI: 6.2883

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF093300030CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.1e-11	143	191	4	52
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L ++ l TRAES3BF093300030CFD_t1 143 PKRVKRILANRQSAQRSRVRKLQYISELERCVTTLQNEVSVLSPRVAFL 191 5999**********************************88887666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-14	140	204	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.53	142	194	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-9	144	189	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.7E-13	144	198	No hit	No description
SuperFamily	SSF57959	5.14E-11	144	198	No hit	No description
CDD	cd14703	2.74E-26	145	196	No hit	No description
PROSITE pattern	PS00036	0	147	162	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MAQLPPKIPT AATGAHHWPG AGVEHHGHGP VAVWADEFAE FAAARRGAHR RSLSDSVAFV 60 EMAPGGCGGA GDFDRLDDDQ LMSMFPDEGG STAPGSENGT SDSDGDKHGK DRYDDGQHDD 120 ANPEEPGPGQ ATPTSSTETI RDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERCVTTLQNE 180 VSVLSPRVAF LDQQRTILTV GNSHLKQRIA ALAQDKLFKD AHQEALKEEI ERLRQVYQQQ 240 NLRMSSGAGA ASDHGGPPPV RAEKELMS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020195077.1	0.0	basic leucine zipper 6-like
Swissprot	Q5JMK6	1e-127	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A446PZP3	0.0	A0A446PZP3_TRITD; Uncharacterized protein
TrEMBL	W5CSH2	0.0	W5CSH2_WHEAT; Uncharacterized protein
STRING	Traes_3B_302AD07C6.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	3e-67	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]