PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF093600190CFD_t1
Common NameTRAES_3BF093600190CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 312aa    MW: 35117.4 Da    PI: 7.9726
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF093600190CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix353.7e-1155147185
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkr....tsesss 77 
                              +Wt++ + aL++a  e+    +r++l +  W evs+ +     r +g+  s  qC+++++ l+k ++k+ke+++      +++s s
  TRAES3BF093600190CFD_t1  55 EWTEDSTFALLDAWGERFACDGRRSLSADEWLEVSRIVaaaasRPTGY-FSESQCRNRIDTLRKMFRKEKERSRLAahrsSNPSPS 139
                              5*************************************8885433443.4889******************998652222467779 PP

                 trihelix  78 tcpyfdql 85 
                              +++yfd++
  TRAES3BF093600190CFD_t1 140 KWVYFDKM 147
                              9*****99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.5E-1554148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDHDAAAASP SASPSSSGAS PSPRSKRRRT DRYALGFEFA PRSAPSAPAP RTTPEWTEDS  60
TFALLDAWGE RFACDGRRSL SADEWLEVSR IVAAAASRPT GYFSESQCRN RIDTLRKMFR  120
KEKERSRLAA HRSSNPSPSK WVYFDKMLSL MCPPTPPPLL PPLTPLVTRR RDTHPVPRRS  180
WGVDVGELVL AGCSKVVPGN SVPDAQLREK QTYETGAVQG EEFAILTEAI HRLREVYERV  240
ESSRRQHMAE LNRMRKDMQR DLEVRRREIL EKAQMEIASL EEEDAKEGAV NNRLEDYNGV  300
EEQNNGPLDA SP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153035.10.0uncharacterized protein LOC109738345
TrEMBLA0A077S2820.0A0A077S282_WHEAT; Uncharacterized protein
STRINGTraes_3B_6A61A445F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.11e-23Trihelix family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]