PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF094200030CFD_t1
Common NameTRAES_3BF094200030CFD_c1, TRAES_3BF107400040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 584aa    MW: 64858.3 Da    PI: 5.1932
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF094200030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.78.5e-26191244155
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+v+SHLQkYRl
  TRAES3BF094200030CFD_t1 191 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNVPGLTRENVASHLQKYRL 244
                              68*******************.9*******************************8 PP
2Response_reg81.23.4e-27131211109
                              EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
             Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                              vl+vdD+p+ +++l+++l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++i  e  +lp+i+++  ge +
  TRAES3BF094200030CFD_t1  13 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALEILRERKnrFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETS 96 
                              89*********************.***************877778**********************6654.8************* PP

                              HHHHHHHTTESEEEESS--HHHHHH CS
             Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                               + + ++ Ga d+l Kp+ ++el++
  TRAES3BF094200030CFD_t1  97 RVMKGVQHGACDYLLKPVRMKELRN 121
                              **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.1E-1641575IPR017053Response regulator B-type, plant
SuperFamilySSF521724.7E-3510133IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.9E-4410144No hitNo description
SMARTSM004481.5E-3111123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.76212127IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2413122IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.02E-2914126No hitNo description
SuperFamilySSF466891.08E-17188247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-28189248IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-22191244IPR006447Myb domain, plants
PfamPF002499.2E-8193243IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MADASAFPYG LRVLVVDDDP TWLKILEKML RKCSYEVTTC GLARVALEIL RERKNRFDIV  60
ISDVNMPDMD GFKLLEHIGL EMDLPVIMMS IDGETSRVMK GVQHGACDYL LKPVRMKELR  120
NIWQHVYRKK MHEVKEIEGH DSCDDLQILR YGFEGFDEKG LFMTVDSDAT RKRKDVDHGD  180
QDSSDGATAK KARVVWSVDL HQKFVNAVNQ IGFDKVGPKK ILDLMNVPGL TRENVASHLQ  240
KYRLYLGRLQ KQNEERLLGS ARQDFSTKGP SSENLNLRSS FQEQPSNTSS GYPHASQKIQ  300
GQSSVSDSQL EETKRMVPLP APDRSMNSVS SAAEPQNVAG VSPIGGVLSF KGLPVNQDRK  360
PSETMILECQ AWTGGVPAKQ FMQYPKHNHA RCDLLGDYAC LPKPDLEHPT APGHLFTPPP  420
LISMSCSTEM DARNFSDVKP ALVDCIKSFS PALTCTADSV SVQISDSVVT STDAADRKFS  480
SVEGLPTTKD CYFGQTSNQG SWLRSQEEPS IICGADFASL PEDLPGYPLQ GGVSFENVGL  540
SSIDLFHYND AMILSGLQSN WYDDQDHFSS ETTDYPLMDG CLFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-18190249463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147288.10.0two-component response regulator ORR26-like
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLW5D4U00.0W5D4U0_WHEAT; Two-component response regulator
STRINGTraes_3B_D9F27151E.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-113response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]