PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF094400050CFD_t1
Common NameTRAES_3BF094400050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 312aa    MW: 34816.4 Da    PI: 6.1617
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF094400050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.6e-52281561128
                      NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                              lppGfrFhPtd+elvv+yL++kv+g++ ++  +i+evd+yk++PwdLp+++  +++ewyfF++rd+ky++g+r+nr++ +gyWkat
  TRAES3BF094400050CFD_t1  28 LPPGFRFHPTDDELVVHYLCRKVAGQPQPV-PIIAEVDLYKFNPWDLPERALFGSREWYFFTPRDRKYPNGSRPNRSAGTGYWKAT 112
                              79*************************999.88***************8777899******************************* PP

                      NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              g dk+v  k  +g++vg+kk Lvfy+grap+g+ktdW+mheyr+
  TRAES3BF094400050CFD_t1 113 GADKPVAPKesGGRTVGIKKALVFYSGRAPRGVKTDWIMHEYRI 156
                              ******998778999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-6424182IPR003441NAC domain
PROSITE profilePS5100561.92528182IPR003441NAC domain
PfamPF023652.7E-2729156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMTAMVKAEP TAAEGSSGRR DAEAELNLPP GFRFHPTDDE LVVHYLCRKV AGQPQPVPII  60
AEVDLYKFNP WDLPERALFG SREWYFFTPR DRKYPNGSRP NRSAGTGYWK ATGADKPVAP  120
KESGGRTVGI KKALVFYSGR APRGVKTDWI MHEYRIAEAD RAPGKKGSLK LDEWVLCRLY  180
NKKNNWEKVK VEQDMAVEAG PNGEVMDALA TDAISDSFQT HDSSEIDSAS GLQQRVFTDM  240
AQGQPRGGMV TVKEDSDWFT GLSMDDLQTC YMNMGQMVNP ATMPGQDGSG YLQSMSSPQM  300
MRPMWQTILP PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-98151882174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ9853290.0GQ985329.1 Triticum aestivum transcription factor TaNAC4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181126.10.0NAC domain-containing protein 68-like
SwissprotQ52QH41e-157NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A077S1450.0A0A077S145_WHEAT; Uncharacterized protein
STRINGMLOC_70929.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.14e-83NAC domain containing protein 102
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  6. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  7. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]