PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF096700030CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 152aa    MW: 17429.2 Da    PI: 5.8768
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF096700030CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1982132656
                              S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              ++  eq+++Le++F+k++yp+ae r++L+++l+++  qVk+WFqN+R   k
  TRAES3BF096700030CFD_t1  82 RLRGEQIQQLEAVFQKSPYPDAELRKDLSERLHMSALQVKFWFQNKRSSSK 132
                              56679******************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-1755133IPR009057Homeodomain-like
PROSITE profilePS5007115.51674134IPR001356Homeobox domain
SuperFamilySSF466894.71E-1675135IPR009057Homeodomain-like
SMARTSM003896.9E-1576138IPR001356Homeobox domain
PfamPF000468.8E-1782132IPR001356Homeobox domain
CDDcd000869.48E-1486132No hitNo description
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDGELPEYDS DVQNMLDHFI TSEQGHLPPH EHGDEMHDLL GATTNMGNTD DANAAAADKG  60
NNNDEETNHV QRMVTRRANY NRLRGEQIQQ LEAVFQKSPY PDAELRKDLS ERLHMSALQV  120
KFWFQNKRSS SKGKRQLQDT KNLLGREPDA KR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-154HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020192134.14e-67homeobox-leucine zipper protein ROC7-like
TrEMBLA0A3B6FHN81e-103A0A3B6FHN8_WHEAT; Uncharacterized protein
STRINGEMT095931e-50(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16772512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.19e-14homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]