PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF096700070CFD_t1
Common NameTRAES_3BF096700070CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 189aa    MW: 21888.4 Da    PI: 6.5119
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF096700070CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.86.4e-12751092256
                              SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              + yp+ae  ++L+++l+++ rqVk+WFqN+R   k
  TRAES3BF096700070CFD_t1  75 CLYPDAELWKDLSERLDMSARQVKFWFQNKRSSSK 109
                              67*****************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.001666115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-874113IPR009057Homeodomain-like
SuperFamilySSF466897.7E-974112IPR009057Homeodomain-like
PfamPF000462.4E-975109IPR001356Homeobox domain
PROSITE profilePS5007110.96577111IPR001356Homeobox domain
CDDcd000861.57E-677109No hitNo description
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDGELLEYDS DVQNMLDPFT TSQHLLQHEH GDEMHGLLGA TTNMGNTDDA NTAAADKGKN  60
NDGETHTHSD QRMECLYPDA ELWKDLSERL DMSARQVKFW FQNKRSSSKG KRQLQDTKNL  120
QRENQMLKDE NQAIKWVVEN KTCLKCAGVM LKTQNTSEHQ RLSRENMWLK EKLRHATAYL  180
KEGLYRNGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-134HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182727.12e-86homeobox-leucine zipper protein ROC2-like
TrEMBLA0A077RX841e-139A0A077RX84_WHEAT; Uncharacterized protein
STRINGTRIUR3_29318-P13e-66(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16772512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.13e-17homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]