PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF097400050CFD_t1
Common NameTRAES_3BF097400050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 698aa    MW: 77147.7 Da    PI: 6.7558
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF097400050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.23.8e-24135236199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v
  TRAES3BF097400050CFD_t1 135 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyNLQRP-SQELVTKDLHGTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAV 219
                              99****************************9966654.469999****************************************** PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F   +++++ l+++v+r+
  TRAES3BF097400050CFD_t1 220 LFL--RDEDGVLRLGVRRA 236
                              ***..56889899999986 PP
2Auxin_resp102.36e-34261341182
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                              +aha++ k++F+++YnPr ++seF+v+++k++++++ ++svGmRfkm++e+ed+serr +G+++g +++d  + ++SkW++L
  TRAES3BF097400050CFD_t1 261 VAHAVAVKNIFHIYYNPRLCESEFIVPYWKFMRSFSEPFSVGMRFKMKYENEDASERRSTGIITGSRESDL-KSHGSKWKCL 341
                              799*****************************************************************776.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-41128247IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-39130238IPR015300DNA-binding pseudobarrel domain
CDDcd100176.02E-22133235No hitNo description
PfamPF023625.9E-22135236IPR003340B3 DNA binding domain
SMARTSM010192.2E-22135237IPR003340B3 DNA binding domain
PROSITE profilePS5086313.578135237IPR003340B3 DNA binding domain
PfamPF065071.3E-27261341IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MIGIDLNTVE EDEEEGGPSA EPPRGTVCLE LWHACAGRVG SLPRKGSAVV YLPEGHLEHI  60
GEAAGAVPPH VFCRVVDVNL QADPAMDEVY AQVSLVVDDE EAKRRMRPGE SEEACEGDSE  120
DTDAAKRRAR MPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYNLQR PSQELVTKDL  180
HGTEWRFRHI YRGQPRRHLL TTGWSAFVNK KKLVSGDAVL FLRDEDGVLR LGVRRAAQLK  240
NVSPFPALFN QDSSLSSLGN VAHAVAVKNI FHIYYNPRLC ESEFIVPYWK FMRSFSEPFS  300
VGMRFKMKYE NEDASERRST GIITGSRESD LKSHGSKWKC LVVRWDDDVE CRWPNRVSPW  360
EIELTGSVSG SHLSSPHSKR LKPCLPQVNP DMLLPSGSVS SDFAESARFH KVLQGQELLG  420
SKTHDGTANS ASRASEARNF QYSDDRNCSI NMSNIPGVPE LGARTPPENH GFSYHCSGFG  480
ESQRFQRVLQ GQEVFHPYEG GTLSDAVIRG SSFCQPDGNC TSGATYKWLT SQGCDYSGPV  540
TLAMPQASSP LSVLMFPQTS SKIHGFEYVC RSLDKDDNIR HVTVNATQDM GRTSHALPLW  600
PHLVSGKAIA SCTGTKKLHS ISSAEHEPND KDVHTNGCKI FGISLTQKVR VCNEVECSSA  660
NCDFQPLKPQ MSKSLGNNCA TVSSSCILFW QLLDAIAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-1032737119361Auxin response factor 1
4ldy_B1e-1032737119361Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00021PBMTransfer from AT2G33860Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761290.0AY376129.1 Triticum aestivum ETTIN-like auxin response factor (ETT2-alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160562.10.0auxin response factor 2-like isoform X2
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLA0A077RF810.0A0A077RF81_WHEAT; Auxin response factor
TrEMBLA0A446PV710.0A0A446PV71_TRITD; Auxin response factor
STRINGTraes_3B_489AC21E2.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-152ARF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]