PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF099000010CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WOX
Protein Properties Length: 158aa    MW: 17666.8 Da    PI: 9.9306
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF099000010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.81.1e-143998357
                             --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                              R+ +t+eql +Le l+++  r+p aee+ + +++l     ++ ++V+ WFqN+  + ++
  TRAES3BF099000010CFD_t1 39 ARWVPTREQLAVLEGLYRQgMRTPAAEEIHQVTARLqehgPIEGKNVFHWFQNQQVRLRQ 98
                             6*****************99****************99999*************988875 PP
2Wus_type_Homeobox94.77.7e-313899364
        Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                             ++RW Pt eQ+ +Le ly++G+rtP++eei+++ta+L+e+G ie+kNVf+WFQN++ R rq+
  TRAES3BF099000010CFD_t1 38 NARWVPTREQLAVLEGLYRQGMRTPAAEEIHQVTARLQEHGPIEGKNVFHWFQNQQVRLRQR 99
                             68*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.002236103IPR001356Homeobox domain
SuperFamilySSF466897.45E-1137103IPR009057Homeodomain-like
PfamPF000461.5E-123998IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-640105IPR009057Homeodomain-like
PROSITE profilePS500719.3614499IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MESVDHHDEA ATRLSLSTPR PPAPLSLTPS PNSAALVNAR WVPTREQLAV LEGLYRQGMR  60
TPAAEEIHQV TARLQEHGPI EGKNVFHWFQ NQQVRLRQRE KQQRSDYFAR QFRRPQPLPV  120
LHSPSGHPFS PVQLQAPPAP NTPACNGEGT SAFGTPFN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175041.11e-98WUSCHEL-related homeobox 5-like
SwissprotA2WWU72e-36WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR862e-36WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLA0A446Q4U01e-111A0A446Q4U0_TRITD; Uncharacterized protein
STRINGMLOC_62882.11e-82(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-28WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]