PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF099600030CFD_t1

Common Name

TRAES_3BF099600030CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bZIP

Protein Properties

Length: 570aa MW: 61710.1 Da PI: 6.8836

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF099600030CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.5e-10	257	287	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 +k err+++NReAA++sR+RKka++++Le+ TRAES3BF099600030CFD_t1 257 SKTERRLAQNREAAKKSRLRKKAYVQNLETS 287 799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-7	254	330	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.0E-7	256	300	No hit	No description
PROSITE profile	PS50217	9.289	256	300	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	9.14E-7	257	301	No hit	No description
Pfam	PF00170	3.8E-7	258	292	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	261	276	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	9.6E-30	339	412	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MVQGEEASCS WRMASAAHDH HERAVLHLNH QAALAYHGGL QLQPHHHAAA APPAASFLDF 60 QPAAAAAAYF GELEEALIHG ANAGVSVADH LHHPHPGGMI AGDAQAKSAA AGGGGGYLAG 120 AGRPPTLEIF PSWPMPHPQQ LHSAGNSQSV GSTTDSSSAR NTMAQMELVS PGPAGSVRPS 180 PSSTTSEQQR QEVMMVTTDD YSHKPGLPPP AAAGLAAAAP SFQQPQHQHQ QLQLHGGGDH 240 DKRKHGSTRK DGKLVDSKTE RRLAQNREAA KKSRLRKKAY VQNLETSRVR LQQMEQELQR 300 ARSQGIFLGG GGAGGDMSPG AAMFDMEYAR WLDDDGKRLA ELRGGLQAHL ADSNLGAAVE 360 ECMQHYDELF QLKAELAHAD VFHLLTGAWA TPAERCFFWM GGFRPSELLK ILIGQLDPLT 420 EQQMMGICGL QHSSEQAEEA LAQGLQQLHQ SLADTVAAGT LNDGTPGPNY MAIMAIALEK 480 LASLESFYQQ ADNLRQQTLH QMRRILTTRQ AARCFLSIGE YYRRLRALSS LWASRPRENF 540 IGTESLSPTG TELQGMQQHH QPQQNQFSGF

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MVQGEEASCS WRMASAAHDH HERAVLHLNH QAALAYHGGL QLQPHHHAAA APPAASFLDF  60
QPAAAAAAYF GELEEALIHG ANAGVSVADH LHHPHPGGMI AGDAQAKSAA AGGGGGYLAG  120
AGRPPTLEIF PSWPMPHPQQ LHSAGNSQSV GSTTDSSSAR NTMAQMELVS PGPAGSVRPS  180
PSSTTSEQQR QEVMMVTTDD YSHKPGLPPP AAAGLAAAAP SFQQPQHQHQ QLQLHGGGDH  240
DKRKHGSTRK DGKLVDSKTE RRLAQNREAA KKSRLRKKAY VQNLETSRVR LQQMEQELQR  300
ARSQGIFLGG GGAGGDMSPG AAMFDMEYAR WLDDDGKRLA ELRGGLQAHL ADSNLGAAVE  360
ECMQHYDELF QLKAELAHAD VFHLLTGAWA TPAERCFFWM GGFRPSELLK ILIGQLDPLT  420
EQQMMGICGL QHSSEQAEEA LAQGLQQLHQ SLADTVAAGT LNDGTPGPNY MAIMAIALEK  480
LASLESFYQQ ADNLRQQTLH QMRRILTTRQ AARCFLSIGE YYRRLRALSS LWASRPRENF  540
IGTESLSPTG TELQGMQQHH QPQQNQFSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX424322	0.0	JX424322.1 Triticum urartu basic leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190191.1	0.0	transcription factor LG2-like isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A077RTB0	0.0	A0A077RTB0_WHEAT; Uncharacterized protein
TrEMBL	A0A446Q5Z9	0.0	A0A446Q5Z9_TRITD; Uncharacterized protein
STRING	MLOC_65998.3	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-112	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]