PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF104200040CFD_t1
Common NameTRAES_3BF104200040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 196aa    MW: 20719.2 Da    PI: 7.5346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF104200040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00054971123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C++C++ F ++  L  H++ H
  TRAES3BF104200040CFD_t1 49 FGCQYCSREFANSQALGGHQNAH 71
                             56******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.41E-64676No hitNo description
Gene3DG3DSA:3.30.160.607.8E-44775IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4894976IPR007087Zinc finger, C2H2
PROSITE patternPS0002805171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0022626Cellular Componentcytosolic ribosome
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MADIRCDQAK MTPSPSPLRI FGYDVPGGAT DATVVLTPPP TPPADPRRFG CQYCSREFAN  60
SQALGGHQNA HKKERQQLKR ARLHVDARMS YFAPPPGHLI AVGHAGSSAY TRDAFHRWVY  120
LAHQSAAGLP FHALPAGGGC QAEPRLLEDP RDCGSAAIST SSGARACTPA DDSTEEASAM  180
GVGLDLDLRL APATSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183213.11e-125zinc finger protein 6-like
TrEMBLA0A077S4Q51e-141A0A077S4Q5_WHEAT; Uncharacterized protein
TrEMBLA0A446Q6441e-141A0A446Q644_TRITD; Uncharacterized protein
STRINGMLOC_10704.11e-122(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1235656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-16C2H2 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]