PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF106000020CFD_t1
Common NameTRAES_3BF106000020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 178aa    MW: 18903.5 Da    PI: 6.7862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF106000020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.71.1e-161868155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ykGVr+++ +g+Wv+eIr+p +   r r +lg++ t+e Aa a++ a   l+g
  TRAES3BF106000020CFD_t1 18 CRYKGVRRRR-WGKWVSEIRVPGT---RERLWLGSYATPEAAAVAHDTAVYFLRG 68
                             78*****777.**********943...5*********************999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-91868IPR001471AP2/ERF domain
CDDcd000182.63E-171862No hitNo description
Gene3DG3DSA:3.30.730.107.1E-251980IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-161979IPR016177DNA-binding domain
PROSITE profilePS5103220.8371979IPR001471AP2/ERF domain
SMARTSM003807.3E-261985IPR001471AP2/ERF domain
PRINTSPR003673.0E-82031IPR001471AP2/ERF domain
PRINTSPR003673.0E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSSAAEASAA RGGEEERCRY KGVRRRRWGK WVSEIRVPGT RERLWLGSYA TPEAAAVAHD  60
TAVYFLRGGG NGAAGLNFPE RAAAAYGXXX XXXXXXXXXX XXXXXXXXDG APRQCYAEAR  120
AGAGAAQGGA NARHAEFQHD GAYAYTYTGD GGDTTGGGGS RGQLVSGELS VDDMEILM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195624.14e-64ethylene-responsive transcription factor ERF020-like
TrEMBLA0A080YUY31e-103A0A080YUY3_WHEAT; Uncharacterized protein
STRINGPavir.J06813.1.p7e-36(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64332951
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.16e-23ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]